Detailed information of SNP:
|
SNP ID:
sf0610584327(Gbrowse)
Chromosome: chr06 Position: 10584327 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 89.10% | 10.90% |
| All Indica | 793 | 84.87% | 15.13% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 370 | 84.05% | 15.95% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610584327 | T->G | INTERGENIC | None |