Detailed information of SNP:
|
SNP ID:
sf0610586021(Gbrowse)
Chromosome: chr06 Position: 10586021 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 497 | 7.44% | 92.56% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610586021 | C->T | INTERGENIC | None |