Detailed information of SNP:
|
SNP ID:
sf0610586399(Gbrowse)
Chromosome: chr06 Position: 10586399 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 65.05% | 34.95% |
| All Indica | 799 | 41.18% | 58.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 28.00% | 72.00% |
| Indica II | 213 | 40.85% | 59.15% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610586399 | C->T | INTERGENIC | None |