Detailed information of SNP:
|
SNP ID:
sf0610586733(Gbrowse)
Chromosome: chr06 Position: 10586733 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.44% | 48.56% |
| All Indica | 799 | 37.42% | 62.58% |
| All Japonica | 497 | 68.01% | 31.99% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 27.47% | 72.53% |
| Indica II | 213 | 31.46% | 68.54% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 54.33% | 45.67% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610586733 | A->G | INTERGENIC | None |