Detailed information of SNP:
|
SNP ID:
sf0610587685(Gbrowse)
Chromosome: chr06 Position: 10587685 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 52.86% | 47.14% |
| All Indica | 796 | 85.05% | 14.95% |
| All Japonica | 496 | 6.65% | 93.35% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 373 | 89.54% | 10.46% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610587685 | G->A | LOC_Os06g18670(LOC_Os06g18670.1) | Synonymous |