Detailed information of SNP:
|
SNP ID:
sf0610588826(Gbrowse)
Chromosome: chr06 Position: 10588826 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.14% | 32.86% |
| All Indica | 795 | 90.44% | 9.56% |
| All Japonica | 497 | 38.03% | 61.97% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 210 | 90.48% | 9.52% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 46.27% | 53.73% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610588826 | T->C | LOC_Os06g18670(LOC_Os06g18670.1) | Non-Synonymous SNP |