Detailed information of SNP:
|
SNP ID:
sf0610589128(Gbrowse)
Chromosome: chr06 Position: 10589128 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 74.93% | 25.07% |
| All Indica | 796 | 79.52% | 20.48% |
| All Japonica | 497 | 65.39% | 34.61% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 78.76% | 21.24% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610589128 | T->C | INTERGENIC | None |