Detailed information of SNP:
|
SNP ID:
sf0610589325(Gbrowse)
Chromosome: chr06 Position: 10589325 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1376 | 71.00% | 29.00% |
| All Indica | 757 | 51.52% | 48.48% |
| All Japonica | 497 | 96.58% | 3.42% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 349 | 49.86% | 50.14% |
| Indica II | 206 | 55.34% | 44.66% |
| Indica Intermediate | 202 | 50.50% | 49.50% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610589325 | T->G | INTERGENIC | None |