Detailed information of SNP:
|
SNP ID:
sf0610591411(Gbrowse)
Chromosome: chr06 Position: 10591411 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 67.86% | 32.14% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 497 | 39.24% | 60.76% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 47.76% | 52.24% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610591411 | G->A | INTERGENIC | None |