Detailed information of SNP:
|
SNP ID:
sf0610595041(Gbrowse)
Chromosome: chr06 Position: 10595041 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 66.79% | 33.21% |
| All Indica | 783 | 42.27% | 57.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 29.48% | 70.52% |
| Indica II | 212 | 41.04% | 58.96% |
| Indica Intermediate | 208 | 65.87% | 34.13% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610595041 | C->T | INTERGENIC | None |