Detailed information of SNP:
|
SNP ID:
sf0610595993(Gbrowse)
Chromosome: chr06 Position: 10595993 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 67.26% | 32.74% |
| All Indica | 794 | 43.32% | 56.68% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 31.81% | 68.19% |
| Indica II | 212 | 41.98% | 58.02% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610595993 | T->A | INTERGENIC | None |