Detailed information of SNP:
|
SNP ID:
sf0610596854(Gbrowse)
Chromosome: chr06 Position: 10596854 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 69.19% | 30.81% |
| All Indica | 796 | 93.84% | 6.16% |
| All Japonica | 496 | 38.31% | 61.69% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 334 | 46.71% | 53.29% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610596854 | A->T | INTERGENIC | None |