Detailed information of SNP:
|
SNP ID:
sf0610601878(Gbrowse)
Chromosome: chr06 Position: 10601878 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 798 | 30.33% | 69.67% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 27.01% | 72.99% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 31.75% | 68.25% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610601878 | T->C | INTERGENIC | None |