Detailed information of SNP:
|
SNP ID:
sf0610606508(Gbrowse)
Chromosome: chr06 Position: 10606508 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 67.47% | 32.53% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 38.63% | 61.37% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 46.87% | 53.13% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610606508 | G->T | INTERGENIC | None |