Detailed information of SNP:
|
SNP ID:
sf0610607096(Gbrowse)
Chromosome: chr06 Position: 10607096 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.23% | 45.77% |
| All Indica | 798 | 24.81% | 75.19% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 9.33% | 90.67% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610607096 | T->C | INTERGENIC | None |