Detailed information of SNP:
|
SNP ID:
sf0610607911(Gbrowse)
Chromosome: chr06 Position: 10607911 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 57.09% | 42.91% |
| All Indica | 769 | 28.87% | 71.13% |
| All Japonica | 493 | 96.55% | 3.45% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 364 | 14.84% | 85.16% |
| Indica II | 208 | 26.44% | 73.56% |
| Indica Intermediate | 197 | 57.36% | 42.64% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 85.71% | 14.29% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610607911 | C->A | INTERGENIC | None |