Detailed information of SNP:
|
SNP ID:
sf0610608055(Gbrowse)
Chromosome: chr06 Position: 10608055 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 51.56% | 48.44% |
| All Indica | 788 | 20.69% | 79.31% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 372 | 11.56% | 88.44% |
| Indica II | 210 | 13.81% | 86.19% |
| Indica Intermediate | 206 | 44.17% | 55.83% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610608055 | A->G | INTERGENIC | None |