Detailed information of SNP:
|
SNP ID:
sf0610608112(Gbrowse)
Chromosome: chr06 Position: 10608112 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 66.55% | 33.45% |
| All Indica | 767 | 41.98% | 58.02% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 355 | 41.69% | 58.31% |
| Indica II | 206 | 30.10% | 69.90% |
| Indica Intermediate | 206 | 54.37% | 45.63% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610608112 | C->T | INTERGENIC | None |