Detailed information of SNP:
|
SNP ID:
sf0610608113(Gbrowse)
Chromosome: chr06 Position: 10608113 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 58.33% | 41.67% |
| All Indica | 775 | 31.23% | 68.77% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 359 | 27.30% | 72.70% |
| Indica II | 210 | 20.00% | 80.00% |
| Indica Intermediate | 206 | 49.51% | 50.49% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610608113 | C->T | INTERGENIC | None |