Detailed information of SNP:
|
SNP ID:
sf0610608230(Gbrowse)
Chromosome: chr06 Position: 10608230 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1344 | 60.12% | 39.88% |
| All Indica | 727 | 32.60% | 67.40% |
| All Japonica | 496 | 95.56% | 4.44% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 334 | 33.53% | 66.47% |
| Indica II | 200 | 17.00% | 83.00% |
| Indica Intermediate | 193 | 47.15% | 52.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610608230 | A->G | LOC_Os06g18710(LOC_Os06g18710.1) | Synonymous |