Detailed information of SNP:
|
SNP ID:
sf0610608944(Gbrowse)
Chromosome: chr06 Position: 10608944 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1344 | 78.20% | 21.80% |
| All Indica | 728 | 61.54% | 38.46% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 354 | 66.38% | 33.62% |
| Indica II | 190 | 45.79% | 54.21% |
| Indica Intermediate | 184 | 68.48% | 31.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610608944 | C->T | LOC_Os06g18710(LOC_Os06g18710.1) | INTRON |