Detailed information of SNP:
|
SNP ID:
sf0610609260(Gbrowse)
Chromosome: chr06 Position: 10609260 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 84.89% | 15.11% |
| All Indica | 777 | 73.75% | 26.25% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 367 | 75.48% | 24.52% |
| Indica II | 208 | 76.44% | 23.56% |
| Indica Intermediate | 202 | 67.82% | 32.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610609260 | C->T | LOC_Os06g18710(LOC_Os06g18710.1) | Synonymous |