Detailed information of SNP:
|
SNP ID:
sf0610610541(Gbrowse)
Chromosome: chr06 Position: 10610541 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1307 | 61.29% | 38.71% |
| All Indica | 709 | 34.56% | 65.44% |
| All Japonica | 483 | 96.27% | 3.73% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 331 | 38.07% | 61.93% |
| Indica II | 192 | 28.12% | 71.88% |
| Indica Intermediate | 186 | 34.95% | 65.05% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 85 | 83.53% | 16.47% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 36 | 58.33% | 41.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610610541 | A->G | INTERGENIC | None |