Detailed information of SNP:
|
SNP ID:
sf0610610567(Gbrowse)
Chromosome: chr06 Position: 10610567 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1299 | 69.82% | 30.18% |
| All Indica | 686 | 45.92% | 54.08% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 333 | 48.65% | 51.35% |
| Indica II | 179 | 37.99% | 62.01% |
| Indica Intermediate | 174 | 48.85% | 51.15% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610610567 | T->C | INTERGENIC | None |