Detailed information of SNP:
|
SNP ID:
sf0610612421(Gbrowse)
Chromosome: chr06 Position: 10612421 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 74.85% | 25.15% |
| All Indica | 681 | 53.74% | 46.26% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 324 | 55.25% | 44.75% |
| Indica II | 176 | 46.02% | 53.98% |
| Indica Intermediate | 181 | 58.56% | 41.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610612421 | A->T | INTERGENIC | None |