Detailed information of SNP:
|
SNP ID:
sf0610612427(Gbrowse)
Chromosome: chr06 Position: 10612427 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1288 | 82.22% | 17.78% |
| All Indica | 675 | 67.11% | 32.89% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 317 | 67.82% | 32.18% |
| Indica II | 177 | 58.76% | 41.24% |
| Indica Intermediate | 181 | 74.03% | 25.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610612427 | T->C | INTERGENIC | None |