Detailed information of SNP:
|
SNP ID:
sf0610619316(Gbrowse)
Chromosome: chr06 Position: 10619316 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 97.37% | 2.63% |
| All Indica | 788 | 97.97% | 2.03% |
| All Japonica | 495 | 96.57% | 3.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 99.18% | 0.82% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610619316 | A->C | INTERGENIC | None |