Detailed information of SNP:
|
SNP ID:
sf0610625136(Gbrowse)
Chromosome: chr06 Position: 10625136 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 67.63% | 32.37% |
| All Indica | 785 | 90.06% | 9.94% |
| All Japonica | 482 | 40.87% | 59.13% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 320 | 51.56% | 48.44% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610625136 | T->C | LOC_Os06g18740(LOC_Os06g18740.1) | Synonymous |