Detailed information of SNP:



SNP ID: sf0610625136(Gbrowse)

Chromosome: chr06

Position: 10625136
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1390 67.63% 32.37%
All Indica785 90.06% 9.94%
All Japonica482 40.87% 59.13%
Aus67 13.43% 86.57%
Indica I367 91.28% 8.72%
Indica II210 97.14% 2.86%
Indica Intermediate208 80.77% 19.23%
Temperate Japonica320 51.56% 48.44%
Tropical Japonica94 22.34% 77.66%
Japonica Intermediate68 16.18% 83.82%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0610625136 T->C LOC_Os06g18740(LOC_Os06g18740.1) Synonymous