Detailed information of SNP:
|
SNP ID:
sf0610627700(Gbrowse)
Chromosome: chr06 Position: 10627700 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 72.62% | 27.38% |
| All Indica | 680 | 50.44% | 49.56% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 321 | 55.76% | 44.24% |
| Indica II | 182 | 37.36% | 62.64% |
| Indica Intermediate | 177 | 54.24% | 45.76% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610627700 | C->T | INTERGENIC | None |