Detailed information of SNP:
|
SNP ID:
sf0610627820(Gbrowse)
Chromosome: chr06 Position: 10627820 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1292 | 85.91% | 14.09% |
| All Indica | 676 | 75.89% | 24.11% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 313 | 81.47% | 18.53% |
| Indica II | 178 | 64.04% | 35.96% |
| Indica Intermediate | 185 | 77.84% | 22.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610627820 | A->G | INTERGENIC | None |