Detailed information of SNP:
|
SNP ID:
sf0610629578(Gbrowse)
Chromosome: chr06 Position: 10629578 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1320 | 87.65% | 12.35% |
| All Indica | 706 | 78.33% | 21.67% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 333 | 79.88% | 20.12% |
| Indica II | 176 | 73.30% | 26.70% |
| Indica Intermediate | 197 | 80.20% | 19.80% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610629578 | A->G | LOC_Os06g18750(LOC_Os06g18750.1) | Non-Synonymous SNP |