Detailed information of SNP:
|
SNP ID:
sf0610629631(Gbrowse)
Chromosome: chr06 Position: 10629631 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1304 | 86.04% | 13.96% |
| All Indica | 689 | 74.89% | 25.11% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 322 | 80.12% | 19.88% |
| Indica II | 186 | 69.89% | 30.11% |
| Indica Intermediate | 181 | 70.72% | 29.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610629631 | G->A | LOC_Os06g18750(LOC_Os06g18750.1) | Synonymous |