Detailed information of SNP:
|
SNP ID:
sf0610632494(Gbrowse)
Chromosome: chr06 Position: 10632494 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 84.81% | 15.19% |
| All Indica | 797 | 94.35% | 5.65% |
| All Japonica | 495 | 67.88% | 32.12% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 333 | 54.35% | 45.65% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610632494 | T->C | LOC_Os06g18760(LOC_Os06g18760.1) | Synonymous |