Detailed information of SNP:
|
SNP ID:
sf0610632503(Gbrowse)
Chromosome: chr06 Position: 10632503 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 76.87% | 23.13% |
| All Indica | 736 | 82.74% | 17.26% |
| All Japonica | 492 | 65.04% | 34.96% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 339 | 83.48% | 16.52% |
| Indica II | 203 | 85.71% | 14.29% |
| Indica Intermediate | 194 | 78.35% | 21.65% |
| Temperate Japonica | 330 | 52.12% | 47.88% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610632503 | A->G | LOC_Os06g18760(LOC_Os06g18760.1) | Synonymous |