Detailed information of SNP:
|
SNP ID:
sf0610633161(Gbrowse)
Chromosome: chr06 Position: 10633161 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1303 | 60.40% | 39.60% |
| All Indica | 717 | 65.41% | 34.59% |
| All Japonica | 481 | 57.59% | 42.41% |
| Aus | 61 | 24.59% | 75.41% |
| Indica I | 333 | 65.47% | 34.53% |
| Indica II | 196 | 77.04% | 22.96% |
| Indica Intermediate | 188 | 53.19% | 46.81% |
| Temperate Japonica | 322 | 44.41% | 55.59% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 6 | 33.33% | 66.67% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610633161 | G->A | LOC_Os06g18760(LOC_Os06g18760.1) | Non-Synonymous SNP |