Detailed information of SNP:
|
SNP ID:
sf0610633321(Gbrowse)
Chromosome: chr06 Position: 10633321 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 96.31% | 3.69% |
| All Indica | 792 | 94.70% | 5.30% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610633321 | C->T | LOC_Os06g18760(LOC_Os06g18760.1) | Non-Synonymous SNP |