Detailed information of SNP:
|
SNP ID:
sf0610633709(Gbrowse)
Chromosome: chr06 Position: 10633709 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 97.38% | 2.62% |
| All Indica | 793 | 95.96% | 4.04% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610633709 | C->T | LOC_Os06g18760(LOC_Os06g18760.1) | Synonymous |