Detailed information of SNP:
|
SNP ID:
sf0610634526(Gbrowse)
Chromosome: chr06 Position: 10634526 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 82.06% | 17.94% |
| All Indica | 788 | 88.83% | 11.17% |
| All Japonica | 496 | 67.94% | 32.06% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 370 | 88.65% | 11.35% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 207 | 84.06% | 15.94% |
| Temperate Japonica | 334 | 54.19% | 45.81% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610634526 | G->C | LOC_Os06g18760(LOC_Os06g18760.1) | Non-Synonymous SNP |