Detailed information of SNP:
|
SNP ID:
sf0610634813(Gbrowse)
Chromosome: chr06 Position: 10634813 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 87.01% | 12.99% |
| All Indica | 716 | 76.26% | 23.74% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 333 | 85.59% | 14.41% |
| Indica II | 197 | 61.42% | 38.58% |
| Indica Intermediate | 186 | 75.27% | 24.73% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610634813 | C->T | LOC_Os06g18760(LOC_Os06g18760.1) | Synonymous |