Detailed information of SNP:
|
SNP ID:
sf0610635369(Gbrowse)
Chromosome: chr06 Position: 10635369 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 74.60% | 25.40% |
| All Indica | 768 | 75.91% | 24.09% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 360 | 74.72% | 25.28% |
| Indica II | 207 | 85.02% | 14.98% |
| Indica Intermediate | 201 | 68.66% | 31.34% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610635369 | G->A | LOC_Os06g18760(LOC_Os06g18760.1) | INTRON |