Detailed information of SNP:
|
SNP ID:
sf0610635474(Gbrowse)
Chromosome: chr06 Position: 10635474 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 82.44% | 17.56% |
| All Indica | 781 | 88.60% | 11.40% |
| All Japonica | 497 | 69.01% | 30.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 86.10% | 13.90% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610635474 | A->G | LOC_Os06g18760(LOC_Os06g18760.1) | Non-Synonymous SNP |