Detailed information of SNP:
|
SNP ID:
sf0610637614(Gbrowse)
Chromosome: chr06 Position: 10637614 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 85.13% | 14.87% |
| All Indica | 784 | 93.24% | 6.76% |
| All Japonica | 494 | 69.23% | 30.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 94.84% | 5.16% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 205 | 86.83% | 13.17% |
| Temperate Japonica | 333 | 55.86% | 44.14% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610637614 | T->C | LOC_Os06g18760(LOC_Os06g18760.1) | INTRON |