Detailed information of SNP:
|
SNP ID:
sf0610638327(Gbrowse)
Chromosome: chr06 Position: 10638327 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 67.04% | 32.96% |
| All Indica | 793 | 88.52% | 11.48% |
| All Japonica | 496 | 42.14% | 57.86% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 370 | 87.57% | 12.43% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 334 | 52.69% | 47.31% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610638327 | T->C | INTERGENIC | None |