Detailed information of SNP:
|
SNP ID:
sf0610638682(Gbrowse)
Chromosome: chr06 Position: 10638682 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 73.00% | 27.00% |
| All Indica | 787 | 94.66% | 5.34% |
| All Japonica | 491 | 47.45% | 52.55% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 365 | 92.33% | 7.67% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 330 | 57.88% | 42.12% |
| Tropical Japonica | 93 | 32.26% | 67.74% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610638682 | A->G | INTERGENIC | None |