Detailed information of SNP:
|
SNP ID:
sf0610639648(Gbrowse)
Chromosome: chr06 Position: 10639648 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 81.05% | 18.95% |
| All Indica | 777 | 87.00% | 13.00% |
| All Japonica | 495 | 67.88% | 32.12% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 362 | 84.81% | 15.19% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 206 | 88.35% | 11.65% |
| Temperate Japonica | 334 | 54.49% | 45.51% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610639648 | T->C | INTERGENIC | None |