Detailed information of SNP:



SNP ID: sf0610639918(Gbrowse)

Chromosome: chr06

Position: 10639918
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1402 71.18% 28.82%
All Indica785 94.39% 5.61%
All Japonica496 43.35% 56.65%
Aus67 20.90% 79.10%
Indica I368 93.21% 6.79%
Indica II212 95.75% 4.25%
Indica Intermediate205 95.12% 4.88%
Temperate Japonica334 53.59% 46.41%
Tropical Japonica94 26.60% 73.40%
Japonica Intermediate68 16.18% 83.82%
Group VI/Aromatic14 7.14% 92.86%
Intermediate40 67.50% 32.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0610639918 C->T INTERGENIC None