Detailed information of SNP:
|
SNP ID:
sf0610639918(Gbrowse)
Chromosome: chr06 Position: 10639918 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 71.18% | 28.82% |
| All Indica | 785 | 94.39% | 5.61% |
| All Japonica | 496 | 43.35% | 56.65% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 368 | 93.21% | 6.79% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 334 | 53.59% | 46.41% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610639918 | C->T | INTERGENIC | None |