Detailed information of SNP:
|
SNP ID:
sf0610640077(Gbrowse)
Chromosome: chr06 Position: 10640077 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 69.72% | 30.28% |
| All Indica | 791 | 91.78% | 8.22% |
| All Japonica | 496 | 43.95% | 56.05% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 372 | 89.25% | 10.75% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 334 | 54.79% | 45.21% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610640077 | G->A | INTERGENIC | None |