Detailed information of SNP:
|
SNP ID:
sf0610641257(Gbrowse)
Chromosome: chr06 Position: 10641257 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 67.57% | 32.43% |
| All Indica | 789 | 88.72% | 11.28% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 369 | 91.06% | 8.94% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 54.03% | 45.97% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610641257 | T->C | LOC_Os06g18770(LOC_Os06g18770.1) | Synonymous |