Detailed information of SNP:
|
SNP ID:
sf0610641845(Gbrowse)
Chromosome: chr06 Position: 10641845 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.24% | 46.76% |
| All Indica | 798 | 85.96% | 14.04% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610641845 | A->G | INTERGENIC | None |