Detailed information of SNP:
|
SNP ID:
sf0610643237(Gbrowse)
Chromosome: chr06 Position: 10643237 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 57.43% | 42.57% |
| All Indica | 799 | 89.86% | 10.14% |
| All Japonica | 497 | 12.27% | 87.73% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 79.15% | 20.85% |
| Temperate Japonica | 335 | 9.25% | 90.75% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0610643237 | C->A | INTERGENIC | None |